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Rare Insights · Edition 05

Evidence, insights and developments shaping the world of rare diseases

12 itemsAbout 3 min read
01 · Clinical exome sequencingLink

Artificial intelligence-assisted clinical exome sequencing: insights and outcomes from 822 paediatric diagnoses

Genetics in Medicine Open ·

Eight hundred and twenty-two consecutive paediatric patients had clinical exome sequencing at a single laboratory. A definitive molecular diagnosis was established in 181 of them, 22 per cent, while 40 per cent were left holding a variant of uncertain significance. A commercial AI platform sat inside the analysis pipeline, scoring variants against each proband's Human Phenotype Ontology terms during the initial case review. Of the 152 pathogenic or likely pathogenic variants in the fully resolved cases, it flagged 98.7 per cent, and ranked 75 per cent inside its top ten.

What those numbers describe is prioritisation, not diagnosis. Flagging a variant is not classifying it, and the 40 per cent uncertain rate is untouched by how well the ranking performed. The prioritisation also ran on phenotype terms, so its usefulness is bounded by how completely the phenotype was captured before sequencing began. The distance between narrowing the search and making the call runs through the rest of this edition.

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This week in the literature
02Inborn errors of immunity

Exome sequencing uncovers phenotypic and genotypic heterogeneity in 196 Indian families evaluated for autoinflammatory disorders

American Journal of Medical Genetics Part A ·

Exome as a first-tier investigation across 202 individuals from 196 Indian families, with consanguinity in 19 per cent. A molecular diagnosis in 25 per cent of families, and only 60 per cent of those were in autoinflammatory genes. The rest were other inborn errors of immunity or monogenic mimics.

03Neurogenetics

A phenotypic paradigm for cerebral palsy genetics

American Journal of Human Genetics ·

Variants in 515 genes have been published as causal in cerebral palsy. Treating cerebral palsy as a phenotypic feature that certain disorders raise the risk of, rather than a diagnosis to be displaced, the null hypothesis of no association could be rejected for only 89 of them.

This week in the ecosystem
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